TRS Data and Tools - Revision history

Vg at 22:38, 19 September 2013

2013-09-19T22:38:28Z

Vg at 22:35, 19 September 2013

2013-09-19T22:35:39Z

Abajian: Updated to add links for interim files and scripts.

2011-12-13T23:55:39Z

Updated to add links for interim files and scripts.

Vg at 23:46, 13 October 2011

2011-10-13T23:46:16Z

Abajian: Updated to include names for zip files and Excel files. Minor reformatting.

2011-09-19T18:43:54Z

Updated to include names for zip files and Excel files. Minor reformatting.

Abajian: Initial release of this page

2011-09-19T08:05:02Z

Initial release of this page

New page

=THIS PAGE UNDER CONSTRUCTION=

==Photometry Data==
* There are 4 ZIP files, each one corresponding to one of the 4 folders of FITS images provided by Varoujan at the Summer Workshop.
* Each zip file holds 3 files for each frame:
*; ''<object>''_irac1.tbl
*: IRAC1 channel photometry results from APT, flux in µJy
*; ''<object>''_irac2.tbl
*: IRAC2 channel photometry results from APT, flux in µJy
*; ''<object>''_irac12.csv
*: Collated IRAC1 and IRAC2 channel results from APT, including only those objects that appear in both channels, filtered for SNR > 3, and converted to magnitude
*: These are the files that will be imported into the Excel workbook

Download the ZIP files here:
; [[placeholder]]
: 147 files for 49 frames
; [[placeholder]]
: 165 files for 55 frames
; [[placeholder]]
: 156 files for 52 frames, plus a README file explaining that two frames each had one bad object removed. (These two positions were causing APT to crash, so they were manually removed from the corresponding CAT files.)
; [[placeholder]]
: 36 files for 12 frames

==Resources==
; [[placeholder|Sample Workbook]]
: This Excel 2011 workbook has the template pages for photometry and the bubble chart.
: Prepared by Mark Abajian
; [[placeholder|Catalog Files]]
: This ZIP file contains 168 listings of object positions, one file for each of the frames we are examining.
: These catalog files were created by trimming the SourceExtractor output files (''<object>''_irac12.cat) provided by Varoujan at the Summer Workshop.
: Two of these catalog files had to be manually updated, to remove one position each, because of an incompatibility with APT. Both the original CAT file and the updated one are included. There are a total of 170 CAT files here.
; [[placeholder|APT Preferences]]
: This file recorded the APT preferences that Mark was using while bulk-processing the FITS files with APT.
===Scripts===
; [[placeholder|setup_APT.sh]]
: Bash shell setup script for running APT on Mark's Mac.
; [[placeholder|zip the cat files]]
; [[placeholder|reunification.py]]
: Python script which generated the latest set of CSV files (magnitude).
: Input are 2 TBL files from APT; output is a CSV file.
; [[placeholder|flux_reunification.py]]
: Python script which generated the first set of CSV files (µJy) at the Summer Workshop.
; [[placeholder|batchAPT.sh]]
: Bash script for running APT on an entire set of FITS files.
: Script needs to be edited to specify source and destination files.
; [[placeholder|batchUnify.sh]]
: Bash script for running the reunification.py script on an entire folder full of photometry files from APT.
: The result is 1 CSV file for each pair of TBL files.
output files

← Older revision		Revision as of 22:38, 19 September 2013
Line 1:		Line 1:
−	~~==Images for best 10 candidates==~~
−	~~; [[Media:sources4spectra.tar.gz\|sources4spectra.tar.gz]]~~
−
−
	==Photometry Data==		==Photometry Data==
	* There are 4 ZIP files, each one corresponding to one of the 4 folders of FITS images provided by Varoujan at the Summer Workshop.		* There are 4 ZIP files, each one corresponding to one of the 4 folders of FITS images provided by Varoujan at the Summer Workshop.

← Older revision		Revision as of 22:35, 19 September 2013
Line 1:		Line 1:
		+	==Images for best 10 candidates==
		+	; [[Media:sources4spectra.tar.gz\|sources4spectra.tar.gz]]
		+
		+
	==Photometry Data==		==Photometry Data==
	* There are 4 ZIP files, each one corresponding to one of the 4 folders of FITS images provided by Varoujan at the Summer Workshop.		* There are 4 ZIP files, each one corresponding to one of the 4 folders of FITS images provided by Varoujan at the Summer Workshop.

@@ Line 24: / Line 24: @@
 : This Excel 2011 workbook has the template pages for photometry and the bubble chart.
 : Prepared by Mark Abajian
-; [[Media:Target_list_110915.xls|Target_list_110915.xls]] (AGN Positions Workbook)
+; [[Media:Target_list_111013.xls|Target_list_111013.xls]] (AGN Positions Workbook)
 : This Excel workbook contains the names and positions for all 168 AGNs
 : Prepared by Varoujan Gorjian

@@ Line 29: / Line 29: @@
-----
+==Interim Data Files==
+; [[Media:TRS168_irac12_cat.zip|Catalog Files]]
 : This ZIP file contains 168 listings of object positions, one file for each of the frames we are examining.
-: These catalog files were created by trimming the SourceExtractor output files (''<object>''_irac12.cat) provided by Varoujan at the Summer Workshop.
+: These catalog files were created by trimming the SourceExtractor output files (''<object>''_irac12.cat) provided by Varoujan at the Summer Workshop.  (See ''iraccat2txt.sh'' script below.)
-: Two of these catalog files had to be manually updated, to remove one position each, because of an incompatibility with APT.  Both the original CAT file and the updated one are included.  For details, see the README.txt file.
+: Two of these catalog files had to be manually updated, to remove one position each, because of an incompatibility with APT.  Both the original CAT file and the updated one are included.  For details, see the README.txt file inside the ZIP file.
-; [[placeholder|APT Preferences]]
+; [[Media:APT.txt|APT Preferences]]
-: This file recorded the APT preferences that Mark was using while bulk-processing the FITS files with APT.
+: This file recorded the APT preferences that Mark was using while bulk-processing the FITS files with APT.  (File extension renamed from .pref to .txt to comply with coolwiki restrictions.)
-  Scripts
+==Scripts==
-; [[placeholder|setup_APT.sh]]
+ '''NOTE''':  All scripts renamed to ".txt" to comply with coolwiki restrictions.
-: Bash shell setup script for running APT on Mark's Mac.
+; [[Media:apt_setup.txt|apt_setup.sh]]
-; [[placeholder|zip the cat files]]
+: Bash shell setup script to initialize environment for running APT on Mark's Mac.
-; [[placeholder|reunification.py]]
+; [[Media:iraccat2txt.txt|iraccat2txt.sh]]
 : Python script which generated the latest set of CSV files (magnitude).
 : Input are 2 TBL files from APT; output is a CSV file.
-; [[placeholder|flux_reunification.py]]
+: Results are above (see "Photometry Data").
-: Python script which generated the first set of CSV files (µJy) at the Summer Workshop.
+; [[Media:flux_reunification.txt|flux_reunification.py]]
-; [[placeholder|batchAPT.sh]]
+: Python script which generated the first set of CSV files (flux in µJy) at the Summer Workshop.
 : Bash script for running APT on an entire set of FITS files.
 : Script needs to be edited to specify source and destination files.
-; [[placeholder|batchUnify.sh]]
+: Directly manipulates the APT preferences file (see above).
-: Bash script for running the reunification.py script on an entire folder full of photometry files from APT.
+; [[Media:batchUnify.txt|batchUnify.sh]]
 : The result is 1 CSV file for each pair of TBL files.
-output files

@@ Line 1: / Line 1: @@
 ==Photometry Data==
 * There are 4 ZIP files, each one corresponding to one of the 4 folders of FITS images provided by Varoujan at the Summer Workshop.
@@ Line 10: / Line 7: @@
 *: IRAC2 channel photometry results from APT, flux in µJy
 *; ''<object>''_irac12.csv
-*: Collated IRAC1 and IRAC2 channel results from APT, including only those objects that appear in both channels, filtered for SNR > 3, and converted to magnitude
+*: Collated IRAC1 and IRAC2 channel results from APT, including only those objects that appear in both channels, filtered for SNR > 3, and converted to magnitude.  (These are the files that should be imported into an Excel workbook.)
 Download the ZIP files here:
-; [[placeholder]]
+; [[Media:NITARP-TRS1-Phot.zip|NITARP-TRS1-Phot.zip]]
 : 147 files for 49 frames
-; [[placeholder]]
+; [[Media:NITARP-TRS2-Phot.zip|NITARP-TRS2-Phot.zip]]
 : 165 files for 55 frames
-; [[placeholder]]
+; [[Media:NITARP-TRS3-Phot.zip|NITARP-TRS3-Phot.zip]]
-: 156 files for 52 frames, plus a README file explaining that two frames each had one bad object removed.  (These two positions were causing APT to crash, so they were manually removed from the corresponding CAT files.)
+: 156 files for 52 frames
-; [[placeholder]]
+; [[Media:NITARP-TRS4-Phot.zip|NITARP-TRS4-Phot.zip]]
 : 36 files for 12 frames
 ==Resources==
-; [[placeholder|Sample Workbook]]
+; [[Media:TRSWorkbook.xlsx|Sample Workbook]]
 : This Excel 2011 workbook has the template pages for photometry and the bubble chart.
 : Prepared by Mark Abajian
 ; [[placeholder|Catalog Files]]
 : This ZIP file contains 168 listings of object positions, one file for each of the frames we are examining.
 : These catalog files were created by trimming the SourceExtractor output files (''<object>''_irac12.cat) provided by Varoujan at the Summer Workshop.
-: Two of these catalog files had to be manually updated, to remove one position each, because of an incompatibility with APT.  Both the original CAT file and the updated one are included.  There are a total of 170 CAT files here.
+: Two of these catalog files had to be manually updated, to remove one position each, because of an incompatibility with APT.  Both the original CAT file and the updated one are included.  For details, see the README.txt file.
 ; [[placeholder|APT Preferences]]
 : This file recorded the APT preferences that Mark was using while bulk-processing the FITS files with APT.
-===Scripts===
 ; [[placeholder|setup_APT.sh]]
 : Bash shell setup script for running APT on Mark's Mac.